Software Packages in "ecne-updates", Subsection science

3depict (0.0.23-2)

visualisation and analysis for single valued point data

abinit (9.10.4-2ubuntu1)

package for electronic structure calculations

abinit-data (9.10.4-2ubuntu1)

package for electronic structure calculations (Data files)

abyss (2.3.7-2ubuntu1)

de novo, parallel, sequence assembler for short reads

aces3 (3.0.8-9)

Advanced Concepts in Electronic Structure III

aces3-data (3.0.8-9)

Advanced Concepts in Electronic Structure III

achilles (2-12)

Artificial life and evolution simulator

aegean (0.16.0+dfsg-3)

integrated genome analysis toolkit

aghermann (1.1.2-5)

Sleep-research experiment manager

alfa (2.2-1build1)

Automated Line Fitting Algorithm

allelecount (4.3.0-2)

NGS copy number algorithms

altree (1.3.2-2build1)

program to perform phylogeny-based association and localization analysis

altree-examples (1.3.2-2build1)

example files for ALTree

ampliconnoise (1.29-10build1)

removal of noise from 454 sequenced PCR amplicons

aoflagger (3.4.0-2build1)

Find RFI in radio astronomical observations

apbs (3.4.1-5build5)

Adaptive Poisson Boltzmann Solver

apbs-data (3.4.1-5build5)

data files for APBS (Adaptive Poisson Boltzmann Solver)

apbs-doc (3.4.1-5build5)

Adaptive Poisson Boltzmann Solver

astrometry.net (0.93+dfsg-1build2)

Astrometry plate solver

ataqv (1.3.1+ds-2build1)

ATAC-seq QC and visualization

atomes (1.1.12+repack-2)

atomic-scale 3D modeling toolbox

atomes-data (1.1.12+repack-2)

atomic-scale 3D modeling toolbox (data)

augustus (3.5.0+dfsg-4build1)

gene prediction in eukaryotic genomes

augustus-data (3.5.0+dfsg-4build1)

data files for AUGUSTUS

avogadro (1.99.0-1)

Molecular Graphics and Modelling System

avogadro-utils (1.99.0-3)

Molecular Graphics and Modelling System (library)

bali-phy (3.6.1+dfsg-2build1)

Bayesian Inference of Alignment and Phylogeny

ballview (1.5.0+git20180813.37fc53c-11build3)

free molecular modeling and molecular graphics tool

bandage (0.9.0-2)

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bandage-examples (0.9.0-2)

Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data)

bart (0.9.00-2)

tools for computational magnetic resonance imaging

bart-view (0.3.00-1)

viewer for multi-dimensional complex-valued data

bcalm (2.2.3-5)

de Bruijn compaction in low memory

bcftools (1.19-1)

genomic variant calling and manipulation of VCF/BCF files

beads (1.1.22-1build1)

2-DE electrophoresis gel image spot detection

bedops (2.4.41+dfsg-1)

high-performance genomic feature operations

belvu (4.44.1+dfsg-7build1)

multiple sequence alignment viewer and phylogenetic tool

berkeley-express (1.5.3+dfsg-3build3)

Streaming quantification for high-throughput sequencing

biosig-tools (2.6.0-1)

format conversion tools for biomedical data formats

biosquid (1.9g+cvs20050121-15)

utilities for biological sequence analysis

bitwise (0.43-1)

Interactive bitwise operation in ncurses

blinken (4:23.08.5-0ubuntu1)

KDE version of the Simon electronic memory game

blixem (4.44.1+dfsg-7build1)

interactive browser of sequence alignments

bornagain (21.1+ds3-2build2)

Simulate and fit X-ray and neutron GISAS -- binary

bppphyview (0.6.1-4)

Bio++ Phylogenetic Viewer

bppsuite (2.4.1-6)

Bio++ program suite

bppsuite-examples (2.4.1-6)

Examples for Bio++ program suite

c-munipack (2.1.36-2)

reduction of images carried out by CCD camera

c-munipack-share (2.1.36-2)

reduction of images carried out by CCD camera (share)

calculix-ccx (2.20-1)

Three-Dimensional Structural Finite Element Program

callisto (1.1.0-2build2)

Daemon for e-Callisto hardware

camitk-actionstatemachine (5.2.0-1)

pipeline replay application for the CamiTK library

camitk-config (5.2.0-1)

Computer Assisted Medical Intervention Tool Kit - config

camitk-imp (5.2.0-1)

workbench application for the CamiTK library

casacore-tools (3.5.0-4ubuntu3)

Tools built with CASA

cassbeam (1.1-4)

Cassegrain antenna modelling

cassiopee (1.0.9-4build1)

index and search tool in genomic sequences

cba (0.3.6-6build1)

Continuous Beam Analysis

cbflib-bin (0.9.7+dfsg1-3)

utilities to manipulate CBF files

centrifuge (1.0.3-11)

rapid and memory-efficient system for classification of DNA sequences

cgns-convert (3.4.0-3)

CFD General Notation System - Conversion tools

chemps2 (1.8.12-3build1)

Executable to call libchemps2-3 from the command line

chemtool (1.6.14-6)

chemical structures drawing program

ckon (0.7.1-5build2)

automatic build tool for ROOT data analysis software

cmtk (3.3.1p2+dfsg-2build1)

Computational Morphometry Toolkit

cod-tools (3.8.1+dfsg-1build1)

tools for manipulating CIF format files

code-saturne (6.0.2-2build1)

General purpose Computational Fluid Dynamics (CFD) software

code-saturne-bin (6.0.2-2build1)

General purpose Computational Fluid Dynamics (CFD) software - binaries

code-saturne-data (6.0.2-2build1)

General purpose Computational Fluid Dynamics (CFD) software - data

code-saturne-include (6.0.2-2build1)

General purpose Computational Fluid Dynamics (CFD) software - includes

coinor-libbonmin4 (1.8.9-1build1)

COIN-OR mixed integer programming

colmap (3.9.1-2)

Structure-from-Motion and Multi-View Stereo

condor (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system

condor-annex-ec2 (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

condor-kbdd (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

condor-test (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

condor-upgrade-checks (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

condor-vm-gahp (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

connectome-workbench (1.5.0-2)

brain visualization, analysis and discovery tool

cpl-plugin-amber (4.4.3+dfsg-1build1)

ESO data reduction pipeline for the AMBER instrument

cpl-plugin-amber-calib (4.4.3+dfsg-1build1)

ESO data reduction pipeline calibration data downloader for AMBER

cpl-plugin-giraf (2.16.10+dfsg-1build1)

ESO data reduction pipeline for the GIRAFFE instrument

cpl-plugin-giraf-calib (2.16.10+dfsg-1build1)

ESO data reduction pipeline calibration data downloader for GIRAFFE

cpl-plugin-uves (6.1.8+dfsg-2build1)

ESO data reduction pipeline for the UVES instrument

cpl-plugin-uves-calib (6.1.8+dfsg-2build1)

ESO data reduction pipeline calibration data downloader for UVES

cpl-plugin-vimos (4.1.7+dfsg-2build1)

ESO data reduction pipeline for the VIMOS instrument

cpl-plugin-vimos-calib (4.1.7+dfsg-2build1)

ESO data reduction pipeline calibration data downloader for VIMOS

cpl-plugin-xshoo (3.5.3+dfsg-1build2)

ESO data reduction pipeline for the XSHOOTER instrument

cpl-plugin-xshoo-calib (3.5.3+dfsg-1build2)

ESO data reduction pipeline calibration data downloader for XSHOOTER

cpptraj (5.1.0+dfsg-3build1)

fast, parallelized molecular dynamics trajectory data analysis

crac (2.5.2+dfsg-5)

integrated RNA-Seq read analysis

ctffind (4.1.14-2)

fast and accurate defocus estimation from electron micrographs

ctsim (6.0.2-6build1)

Computed tomography simulator

ctsim-help (6.0.2-6build1)

Online help file for CTSim

darknet (0.0.0+git20180914.61c9d02e-2build5)

Open Source Neural Networks in C

dazzdb (1.0+git20230919.414ad05-1)

manage nucleotide sequencing read data

dcmtk (3.6.7-9)

OFFIS DICOM toolkit command line utilities

delly (1.1.8-1build1)

Structural variant discovery by read analysis

dextractor (1.0-6)

(d)extractor and compression command library

dialign (2.2.1-11)

Segment-based multiple sequence alignment

dialign-tx (1.0.2-14)

Segment-based multiple sequence alignment

dialign-tx-data (1.0.2-14)

Segment-based multiple sequence alignment (data files)

dials (3.17.0+dfsg3-3)

Diffraction Integration for Advanced Light Sources

dicomnifti (2.33.1-5)

converts DICOM files into the NIfTI format

discosnp (1:2.6.2-3)

discovering Single Nucleotide Polymorphism from raw set(s) of reads

dmrgpp (6.06-1)

Density matrix renormalization group algorithm

dotter (4.44.1+dfsg-7build1)

detailed comparison of two genomic sequences

dpuser (4.1+dfsg-2)

Interactive language for handling numbers, strings, and matrices

drawxtl (5.5-6.1)

crystal structure viewer

drs4eb (5.0.6+git20211217+ds-3)

DRS4 Evaluation Board software

dsdp (5.8-10)

Software for Semidefinite Programming

dx (1:4.4.4-15build1)

OpenDX (IBM Visualization Data Explorer) - main package

dyssol (1.1.1+ds1-2)

Tool for dynamic flowsheet simulation. Command line tool

dyssol-data (1.1.1+ds1-2)

Tool for dynamic flowsheet simulation. Data files

dyssol-gui (1.1.1+ds1-2)

Tool for dynamic flowsheet simulation. GUI

easychem (0.6-9)

Draw high-quality molecules and 2D chemical formulas

ecflow-client (5.12.0-1)

Client tools for Meteorological workflow

ecflow-server (5.12.0-1)

Meteorological workflow controller - server

ectrans-utils (1.2.0-2)

Spherical Harmonics Transforms library - utilities

edfbrowser (2.06+dfsg-1)

viewer for biosignal storage files such as bdf and edf

edlib-aligner (1.2.7-4build2)

edlib sequence alignment tool using edit distance

elk-lapw (9.2.12-1)

All-Electron Density-Functional Electronic Structure Code

engauge-digitizer (12.1+ds.1-1)

interactively extracts numbers from bitmap graphs or maps

esys-particle (2.3.5+dfsg2-6build3)

Software for particle-based numerical modelling (MPI version)

examl (3.0.22-4)

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

exonerate (2.4.0-5)

generic tool for pairwise sequence comparison

expeyes-clib (5.3.1+repack-5)

hardware & software framework for developing science experiments

fast5 (0.6.5-7build3)

utilities for manipulating Oxford Nanopore Fast5 files

fastqtl (2.184+v7+dfsg-4build1)

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

ffindex (0.9.9.9-6)

simple index/database for huge amounts of small files

fiat-utils (1.2.0-3)

Fortran IFS and Arpege Toolkit - utilities

finalcif (134+dfsg-1ubuntu0.1)

editor for Crystallographic Information Format

fitscut (1.4.4-5build2)

Extract cutouts from FITS image format files

fitspng (2.0-2)

FITS to PNG converter

fitsverify (4.22-1)

FITS File Format-Verification Tool

fityk (1.3.2-3)

general-purpose nonlinear curve fitting and data analysis

foma (1:0.10.0+s311-1.1)

Tools for constructing various finite-state automata

foma-bin (1:0.10.0+s311-1.1)

Transitional package for foma

form (4.3.0+git20230104+ds-1)

Symbolic manipulation system

fractalnow (0.8.2-5)

Fast, advanced fractal generator

free42-nologo (3.1.4+ds-1)

Free42 is a re-implementation of the HP-42S calculator

freecad (0.21.2+dfsg1-6trisquel1)

Extensible Open Source CAx program

freecad-common (0.21.2+dfsg1-6trisquel1)

Extensible Open Source CAx program - common files

freecad-python3 (0.21.2+dfsg1-6trisquel1)

Extensible Open Source CAx program - Python 3 binaries

freecontact (1.0.21-13build1)

fast protein contact predictor

frog (0.20-2build5)

tagger and parser for natural languages (runtime)

ftools-fv (5.5.2+dfsg-2build1)

Tool for viewing and editing FITS format files

ftools-pow (5.5.2+dfsg-2build1)

Curve plotting and image display interface tool

funtools (1.4.8-1)

Minimal buy-in FITS utility package

fxt-tools (0.3.13-4)

Multithreaded tracing library

gabedit (2.5.1+ds-1build1)

graphical user interface to Ab Initio packages

gamgi (0.17.5-1)

General Atomistic Modelling Graphic Interface (GAMGI)

gamgi-data (0.17.5-1)

General Atomistic Modelling Graphic Interface (data)

garli (2.1-7)

phylogenetic analysis of molecular sequence data using maximum-likelihood

garli-examples (2.1-7)

phylogenetic analysis of molecular sequence data (examples)

garli-mpi (2.1-7)

phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI)

gatb-core (1.4.2+dfsg-13)

Genome Analysis Toolbox with de-Bruijn graph

gatb-core-testdata (1.4.2+dfsg-13)

Genome Analysis Toolbox with de-Bruijn graph (test data)

gbrowse (2.56+dfsg-12build1)

GMOD Generic Genome Browser

gbrowse-calign (2.56+dfsg-12build1)

CAlign helper

gbrowse-data (2.56+dfsg-12build1)

Sample data to use GBrowse

gchempaint (0.14.17-6.2)

2D chemical structures editor for the GNOME2 desktop

gcrystal (0.14.17-6.2)

lightweight crystal structures visualizer

gcu-bin (0.14.17-6.2)

GNOME chemistry utils (helper applications)

gdal-bin (3.8.4+dfsg-1)

Geospatial Data Abstraction Library - Utility programs

gdal-data (3.8.4+dfsg-1)

Geospatial Data Abstraction Library - Data files

gdal-plugins (3.8.4+dfsg-1)

Geospatial Data Abstraction Library - Plugins

gdis (0.90-6build1)

molecular and crystal model viewer

gdis-data (0.90-6build1)

molecular and crystal model viewer (data files)

gdpc (2.2.5-16)

visualiser of molecular dynamic simulations

gdpc-examples (2.2.5-16)

example files for the gdpc program

gelemental (2.0.2-1)

Periodic Table viewer

genomethreader (1.7.3+dfsg-10)

software tool to compute gene structure predictions

genometools (1.6.5+ds-2)

versatile genome analysis toolkit

genometools-common (1.6.5+ds-2)

shared data files for GenomeTools

gfsview-batch (20121130+dfsg-8)

batch-version of viewer for Gerris simulation files

ggd-utils (1.0.0+ds-1ubuntu0.24.04.3)

programs for use in ggd

ghmm (0.9~rc3-4)

General Hidden-Markov-Model library - tools

glgrib-data (1.0-3build3)

Display GRIB2 fields using OpenGL (data for glgrib)

glgrib-egl (1.0-3build3)

Render geophysical fields encoded in GRIB edition 2 using OpenGL

glgrib-glfw (1.0-3build3)

Interactive display for geophysical fields encoded in GRIB2

glgrib-shaders (1.0-3build3)

Display GRIB2 fields using OpenGL (shaders for glgrib)

glgrib-testdata (1.0-3build3)

Display GRIB2 fields using OpenGL (test data for glgrib)

glgrib-tk (1.0-3build3)

Display GRIB2 fields using OpenGL (Perl/Tk interface)

gmap (2023-12-01+ds-2)

spliced and SNP-tolerant alignment for mRNA and short reads

gmt (6.5.0+dfsg-1)

Generic Mapping Tools

gmt-common (6.5.0+dfsg-1)

Generic Mapping Tools - Architecture-independent files

gnuastro (0.22-3)

GNU Astronomy Utilities programs

golang-github-brentp-gsort-dev (0.1.4-3ubuntu0.24.04.2)

library package for gsort

golang-github-gogetdata-ggd-utils-dev (1.0.0+ds-1ubuntu0.24.04.3)

library for use in ggd

gpaw (23.9.1-1build1)

DFT and beyond within the projector-augmented wave method

gperiodic (3.0.3-1)

periodic table application

grads (3:2.2.1-6)

Grid Analysis and Display System for earth science data

grass (8.3.1-2)

Geographic Resources Analysis Support System (GRASS GIS)

grass-core (8.3.1-2)

GRASS GIS core components

grass-doc (8.3.1-2)

GRASS GIS user documentation

grass-gui (8.3.1-2)

GRASS GIS graphical user interfaces

gravit (0.5.1+dfsg-6)

visually stunning gravity simulator

gravit-data (0.5.1+dfsg-6)

data files for Gravit

gri (2.12.27-1.1)

a language for scientific illustration

gromacs (2023.3-1ubuntu1)

Molecular dynamics simulator, with building and analysis tools

gromacs-data (2023.3-1ubuntu1)

GROMACS molecular dynamics sim, data and documentation

gsort (0.1.4-3ubuntu0.24.04.2)

sort genomic data

gwyddion (2.64-1)

Scanning Probe Microscopy visualization and analysis tool

gwyddion-common (2.64-1)

architecture-independent files for Gwyddion SPM analysis tool

gyoto (2.0.2-1)

General relativistic geodesic integration and ray-tracing

gyoto-bin (2.0.2-1)

General relativistic ray-tracing command-line interface

h5utils (1.13.2-1)

HDF5 files visualization tools

harvest-tools (1.3-8build3)

archiving and postprocessing for reference-compressed genomic multi-alignments

hdf5-filter-plugin (0.0~git20221111.49e3b65-4)

external filters for HDF5: LZ4, BZip2, Bitshuffle

hdf5-filter-plugin-blosc-serial (0.0~git20220616.9683f7d-5)

blocking, shuffling and lossless compression library

hdf5-filter-plugin-zfp-serial (1.1.1-2)

Compression plugin for the HDF5 library using ZFP compression

hdf5-helpers (1.10.10+repack-3ubuntu1)

HDF5 - Helper tools

hdf5-tools (1.10.10+repack-3ubuntu1)

HDF5 - Runtime tools

hfst (3.16.0-5build2)

Helsinki Finite-State Transducer Technology

hfst-ospell (0.5.4-1)

Spell checker library and tool based on HFST

hpcc (1.5.0-3)

HPC Challenge benchmark

htcondor (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

htcondor-annex-ec2 (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

htcondor-dev (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

htcondor-doc (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

htcondor-test (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

htcondor-upgrade-checks (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

hyphy-common (2.5.59+dfsg-1)

Hypothesis testing using Phylogenies (common files)

hyphy-mpi (2.5.59+dfsg-1)

Hypothesis testing using Phylogenies (MPI version)

hyphy-pt (2.5.59+dfsg-1)

Hypothesis testing using Phylogenies (pthreads version)

ignition-common-cli (4.7.0+ds2-2ubuntu1)

Collection of useful code used by robotics apps - CLI tools

ignition-transport-cli (11.0.0+ds-4build1)

Ignition Robotics transport Library - CLI tools

imview (1.1.9h-4build1)

Image viewing and analysis application

indi-fli (1.5+20221225141318-1)

INDI driver for FLI CCD & Focuser

indi-gige (0.1+20221223115700-1)

INDI driver for GigE machine vision cameras

indi-gphoto (3.2+20221221172841-2)

INDI driver for GPhoto (DSLR) Cameras

indi-gpsd (0.5+20221222000619-1build1)

INDI driver for gpsd GPS daemon

indi-starbook (0.8+20221222163625-1)

INDI driver for Vixen Starbook telescope controllers

indi-weewx-json (1.0-1)

INDI driver for the WeeWX Weather Station

iqtree (2.0.7+dfsg-1)

efficient phylogenetic software by maximum likelihood

iraf (2.17.1-5)

Image Reduction and Analysis Facility

iraf-dev (2.17.1-5)

Image Reduction and Analysis Facility (development files)

iraf-fitsutil (2018.07.06-6)

FITS utilities for IRAF

iraf-mscred (5.05+2018.07.09-3)

CCD mosaic reduction package for IRAF

iraf-noao (2.17.1-5)

IRAF NOAO data reduction package

iraf-noao-dev (2.17.1-5)

IRAF NOAO data reduction package (development files)

iraf-rvsao (2.8.5-2)

IRAF package to obtain radial velocities from spectra

iraf-sptable (1.0~pre20180612-3)

IRAF package for Tabular Spectra

iraf-st4gem (1.0+ds-2)

Selected tools from the Space Telescope Science Data Analysis System

iraf-wcstools (3.9.7-1)

Handle the WCS of a FITS image (IRAF package)

ismrmrd-schema (1.8.0-2build2)

schema for ISMRMRD

ismrmrd-tools (1.8.0-2build2)

command-line tools for ISMRMRD

jellyfish (2.3.1-2build1)

count k-mers in DNA sequences

jellyfish-examples (2.3.1-2build1)

count k-mers in DNA sequences (examples for testing)

kalzium (4:23.08.5-0ubuntu1)

periodic table and chemistry tools

kalzium-data (4:23.08.5-0ubuntu1)

data files for Kalzium

kleborate (2.4.1-2)

tool to screen Klebsiella genome assemblies

kleborate-examples (2.4.1-2)

tool to screen Klebsiella genome assemblies (example data)

konclude (0.7.0+1138+git20220514~dfsg-1)

tableau-based description logic reasoner for the semantic web

kst (2.0.8-5build2)

scientific data plotting tool

kstars (5:3.6.2-2ubuntu3)

desktop planetarium, observation planning and telescope control

kstars-data (5:3.6.2-2ubuntu3)

data files for KStars desktop planetarium

lamarc (2.1.10.1+dfsg-7build1)

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

lammps (20240207+dfsg-1)

Molecular Dynamics Simulator

libadios-bin (1.13.1-34)

ADIOS Adaptable IO system for simulations - binaries

libadios-examples (1.13.1-34)

Examples for the ADIOS Adaptable IO system

libball1.5-data (1.5.0+git20180813.37fc53c-11build3)

Biochemical Algorithms Library (data files)

libbio-db-hts-perl (3.01-4build1)

Perl interface to the HTS library

libcassie1v5 (1.0.9-4build1)

library implementating search algorithms

libclhep2.1v5 (2.1.4.1+dfsg-1.1)

CLHEP: A Class Library for High Energy Physics

libdyssol1.0 (1.1.1+ds1-2)

Tool for dynamic flowsheet simulation. Shared libraries

libeccodes-data (2.34.0-1)

GRIB and BUFR enecoding/encoding software library - data

libeckit-utils (1.25.2-2)

C++ toolkit for ECMWF tools and applications - development files

libej0 (5.3.1+repack-5)

hardware & software framework for developing science experiments

libfckit-utils (0.11.0-6)

Library Fortran toolkit for interoperating Fortran with C/C++

libgenometools0 (1.6.5+ds-2)

versatile genome analysis library

libgfsgl0 (20121130+dfsg-8)

graphical viewer for Gerris simulation files. Shared library

libgiac0 (1.9.0.69+dfsg2-1)

Computer Algebra System C++ library

libhdf5-jni (1.10.10+repack-3ubuntu1)

native library used by libhdf5-java

liblammps-dev (20240207+dfsg-1)

Molecular Dynamics Simulator (dev files)

liblammps0 (20240207+dfsg-1)

Molecular Dynamics Simulator (shared library)

libliggghts3 (3.8.0+repack1-9build1)

Open Source DEM Particle Simulation Software. Shared library

liblorene-debian1 (0.0.0~cvs20161116+dfsg-1.1ubuntu1)

liblorene shared library

liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1.1ubuntu1)

liblorene_export shared library

liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1.1ubuntu1)

liblorenef77 shared library

libmstoolkit-tools (82-7)

libraries for manipulating mass spectrometry data - tools

libncarg-bin (6.6.2.dfsg.1-4)

NCAR command-language library - development tools

libncarg-data (6.6.2.dfsg.1-4)

NCAR command-language library - Data

libonnx-dev (1.14.1-2)

Open Neural Network Exchange (ONNX) (dev)

libonnx-testdata (1.14.1-2)

Open Neural Network Exchange (ONNX) (test data)

libonnx1 (1.14.1-2)

Open Neural Network Exchange (ONNX) (libs)

libopenfoam (1912.200626-2build1)

Open source toolbox for Computational Fluid Dynamics (CFD) - libraries

libpwiz-tools (3.0.18342-4build2)

ProteoWizard command line tools

libqgis-customwidgets (3.28.15+dfsg-1)

QGIS custom widgets for Qt Designer

librasterlite2-1 (1.1.0~beta1-3build2)

library for huge raster coverages using a SpatiaLite DBMS

libsilo-bin (4.11-3build2)

Utilities to manipulate libsilo files

libsqlite3-mod-virtualpg (2.0.1-2)

Loadable dynamic extension to both SQLite and SpatiaLite

libstxxl1v5 (1.4.1-4)

C++ Standard Template Library for extra large datasets

libtrexio0 (2.2.3-3)

TREX I/O library for efficient data I/O in quantum chemistry.

libuhd4.6.0-dpdk-tests (4.6.0.0+ds1-5.1ubuntu0.24.04.1)

universal hardware driver for Ettus Research products - DPDK tests

libxy-bin (1.6-3)

xylib - utilities

liggghts (3.8.0+repack1-9build1)

Open Source DEM Particle Simulation Software.

lorene (0.0.0~cvs20161116+dfsg-1.1ubuntu1)

framework for numerical relativity

lorene-codes-src (0.0.0~cvs20161116+dfsg-1.1ubuntu1)

source files of LORENE-based codes

ltrsift (1.0.2-9build1)

postprocessing and classification of LTR retrotransposons

lumpy-sv (0.3.1+dfsg-7build1)

general probabilistic framework for structural variant discovery

lumpy-sv-examples (0.3.1+dfsg-7build1)

general probabilistic framework for structural variant discovery (data)

lxi-tools (2.7-1)

LAN eXtensions for Instrumentation (LXI) software interface

macs (3.0.1-1)

Model-based Analysis of ChIP-Seq on short reads sequencers

macsyfinder (2.1.2-1)

detection of macromolecular systems in protein datasets

maffilter (1.3.1+dfsg-5build1)

process genome alignment in the Multiple Alignment Format

maffilter-examples (1.3.1+dfsg-5build1)

process genome alignment in the Multiple Alignment Format (example data)

mandelbrot-solver (3.2.1-10)

Solver for Mandelbrot polynomials based on MPSolve

massxpert (8.3.0-1)

transitional package for massxpert -> massxpert2

massxpert2 (8.3.0-1)

polymer chemistry modelling and mass spectrometry data simulation (runtime)

massxpert2-data (8.3.0-1)

polymer chemistry modelling and mass spectrometry data simulation (data)

mbt (3.6-3)

memory-based tagger-generator and tagger

mbtserver (0.14-2)

Server extensions for the MBT tagger

megadepth (1.2.0-4)

computes coverage from BigWig and BAM sequencing files

metview (5.21.1-1)

Interactive data visualization and analysis environment,

metview-data (5.21.1-1)

Data needed for the Metview data analysis environment

mia-doctools (2.4.7-13build1)

Helper scripts for run-time document creation

mia-tools (2.4.7-13build1)

Command line tools for gray scale image processing

mialmpick (0.2.15-2)

Tools for landmark picking in 3D volume data sets

minc-tools (2.3.00+dfsg-10)

MNI medical image format tools

mindthegap (2.3.0-3)

performs detection and assembly of DNA insertion variants in NGS read datasets

mindthegap-examples (2.3.0-3)

optional scripts and example resources for mindthegap

minia (3.2.6-4)

short-read biological sequence assembler

minicondor (23.4.0+dfsg-1ubuntu4.1)

distributed workload management system - single node configuration

minihtcondor (23.4.0+dfsg-1ubuntu4.1)

transitional dummy package

minimap2 (2.24+dfsg-3build2)

versatile pairwise aligner for genomic and spliced nucleotide sequences

minisat (1:2.2.1-7)

Fast and lightweight SAT solver

mitools (2.0.5-5)

view, convert and perform basic maths with medical image datasets

mmb (4.0.0+dfsg-3)

model the structure and dynamics of macromolecules

mmb-common (4.0.0+dfsg-3)

model the structure and dynamics of macromolecules (common files)

molequeue (0.9.0-1)

Desktop integration of high performance computing resources

montage (6.0+dfsg-8)

Toolkit for assembling FITS images into mosaics

montage-gridtools (6.0+dfsg-8)

Create files to run montage on the grid

mothur (1.48.0-2)

sequence analysis suite for research on microbiota

mpb (1.11.1-5)

MIT Photonic-Bands

mpb-mpi (1.11.1-5)

MIT Photonic-Bands, parallel (mpich) version

mpb-scm (1.11.1-5)

MIT Photonic-Bands initialisation files

mpgrafic (0.3.19-1build1)

MPI version of N-body initial conditions grafic package

mpqc (2.3.1-22)

Massively Parallel Quantum Chemistry Program

mpqc-support (2.3.1-22)

Massively Parallel Quantum Chemistry Program (support tools)

mpsolve (3.2.1-10)

Multiprecision polynomial solver (command line version)

mrbayes-mpi (3.2.7a-7)

Bayesian Inference of Phylogeny - mpi version

mrpt-apps (1:2.11.9+ds-1)

Mobile Robot Programming Toolkit - Console and GUI applications

mrpt-common (1:2.11.9+ds-1)

Mobile Robot Programming Toolkit - Example datasets and files

mrtrix3 (3.0.4-1)

diffusion-weighted MRI white matter tractography

munipack (0.6.1-1build1)

Astronomical photometry software package

munipack-cli (0.6.1-1build1)

Command line interface of Munipack

munipack-core (0.6.1-1build1)

Core routines of Munipack

munipack-gui (0.6.1-1build1)

Graphical user interface of Munipack

murasaki (1.68.6-13build4)

homology detection tool across multiple large genomes

murasaki-common (1.68.6-13build4)

homology detection tool across multiple large genomes (common files)

murasaki-mpi (1.68.6-13build4)

homology detection tool across multiple large genomes (MPI-version)

music-bin (1.2.1-0.2build1)

Multi-Simulation Coordinator for MPI -- Utilities

nanopolish (0.14.0-1ubuntu1)

consensus caller for nanopore sequencing data

nautic (1.5-6build1)

computation of observer position in astro-navigation

ncbi-blast+ (2.12.0+ds-4)

next generation suite of BLAST sequence search tools

ncbi-blast+-legacy (2.12.0+ds-4)

NCBI Blast legacy call script

ncbi-cn3d (3.0.20170106+dfsg1-10)

3-dimensional viewer for biological molecules

ncbi-entrez-direct (19.2.20230331+dfsg-3ubuntu0.24.04.3)

NCBI Entrez utilities on the command line

ncbi-rrna-data (6.1.20170106+dfsg1-10)

large rRNA BLAST databases distributed with the NCBI toolkit

ncbi-tools-bin (6.1.20170106+dfsg1-10)

NCBI libraries for biology applications (text-based utilities)

ncbi-tools-x11 (6.1.20170106+dfsg1-10)

NCBI libraries for biology applications (X-based utilities)

ncl-ncarg (6.6.2.dfsg.1-4)

NCAR Command Language and NCAR graphics

ncview (2.1.8+ds-5)

X11 visual browser for NetCDF format files

neat (2.3.2-2build1)

Nebular Empirical Analysis Tool

netcdf-bin (1:4.9.2-3ubuntu1)

Programs for reading and writing NetCDF files

neuron (8.2.2-6)

Simulation environment for computational models of neurons

neuron-dev (8.2.2-6)

Neuron simulation environment - Development files

nexus-tools (4.4.3-6)

NeXus scientific data file format - applications

njplot (2.4-9)

phylogenetic tree drawing program

nmodl (0.6-2)

Code generation engine for the NEURON modeling language

ntcard (1.2.2+dfsg-7ubuntu1)

Streaming algorithm to estimate cardinality in genomics datasets

nwchem (7.2.2-1build1)

High-performance computational chemistry software (default MPI)

nwchem-data (7.2.2-1build1)

High-performance computational chemistry software (data files)

nwchem-mpich (7.2.2-1build1)

High-performance computational chemistry software (MPICH build)

nwchem-openmpi (7.2.2-1build1)

High-performance computational chemistry software (OpenMPI build)

occt-draw (7.6.3+dfsg1-7)

Open CASCADE Technology command interpreter and graphical test system

octave-bart (0.9.00-2)

Octave bindings for BART

octave-biosig (2.6.0-1)

Octave bindings for BioSig library

octave-gdf (0.1.3-11build1)

IO library for the GDF -- Octave interface

octave-psychtoolbox-3 (3.0.19.5.dfsg1-1)

toolbox for vision research -- Octave bindings

octomap-tools (1.9.7+dfsg-3)

Tools for 3D occupancy grid mapping

octovis (1.9.7+dfsg-3)

Visualization tool for OctoMap

odil (0.12.2-4)

C++11 library for the DICOM standard (application)

odin (2.0.5-5)

develop, simulate and run magnetic resonance sequences

ogdi-bin (4.1.1+ds-1)

Open Geographic Datastore Interface Library -- utilities

ompl-demos (1.5.2+ds1-1build1)

Open Motion Planning Library (OMPL) demos

ompl-plannerarena (1.5.2+ds1-1build1)

Open Motion Planning Library (OMPL) plannerarena

open3d-gui (0.18.0+ds-3)

Transitional dummy package for open3d-viewer

open3d-tools (0.18.0+ds-3)

Library for 3D data processing - tools

open3d-viewer (0.18.0+ds-3)

Library for 3D data processing - viewer GUI

open3d-viewer-data (0.18.0+ds-3)

Library for 3D data processing - viewer GUI resources

openbabel (3.1.1+dfsg-9ubuntu2)

Chemical toolbox utilities (cli)

openbabel-gui (3.1.1+dfsg-9ubuntu2)

Chemical toolbox utilities (graphical user interface)

opendrop (3.3.1-6)

fully-featured pendant drop tensiometry software

openfoam (1912.200626-2build1)

Open source toolbox for Computational Fluid Dynamics (CFD) - binaries

openfoam-examples (1912.200626-2build1)

Open source toolbox for Computational Fluid Dynamics (CFD) - examples

openmolcas (23.10-1)

Quantum chemistry software package

openmolcas-data (23.10-1)

Quantum chemistry software package (data files)

openms (2.6.0+cleaned1-4)

package for LC/MS data management and analysis

openms-common (2.6.0+cleaned1-4)

package for LC/MS data management and analysis - shared data

openstructure (2.5.0-1ubuntu1)

Open-Source Computational Structural Biology Framework

openturns-common (1.21.1-4ubuntu1)

generic tool to treat and quantify uncertainties (common files)

orthanc (1.12.2+dfsg-1)

Lightweight, RESTful DICOM server for medical imaging

orthanc-dicomweb (1.16+dfsg-1)

Plugin to extend Orthanc with support of WADO and DICOMweb

orthanc-gdcm (1.6+dfsg-1)

DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k)

orthanc-mysql (5.0+dfsg-1build1)

Plugins to use MySQL or MariaDB as a database back-end to Orthanc

orthanc-neuro (1.0-2build1)

Neuroimaging plugin for Orthanc

orthanc-postgresql (5.0+dfsg-2build1)

Plugins to use PostgreSQL as a database back-end to Orthanc

orthanc-python (4.1+ds-2build2)

Develop plugins for Orthanc using the Python programming language

orthanc-wsi (2.0+dfsg-2build1)

Whole-slide imaging support for Orthanc (digital pathology)

oscar (1.5.1-1)

Open Source CPAP Analysis Reporter (OSCAR)

osra (2.1.3-3)

optical structure recognition

otf-trace (1.12.5+dfsg-8)

Open Trace Format support library - development files

otf2-tools (3.0.3-3)

Open Trace Format support library - tools

paraview (5.11.2+dfsg-6build1)

Parallel Visualization Application

persalys (15.0+ds-3build2)

GUI for uncertainty treatment and variabilities management

phylip (1:3.697+dfsg-3)

package of programs for inferring phylogenies

phylip-doc (1:3.697+dfsg-3)

package of programs for inferring phylogenies (documentation)

phyml (3:3.3.20220408-3)

Phylogenetic estimation using Maximum Likelihood

physamp (1.1.0-4)

sample sequence alignment corresponding to phylogeny

pinfish (0.1.0+ds-4ubuntu0.24.04.3)

Collection of tools to annotate genomes using long read transcriptomics data

pinfish-examples (0.1.0+ds-4ubuntu0.24.04.3)

Examples and test data for pinfish

pktools (2.6.7.6+ds-4build2)

GDAL add-on tools to perform useful raster processing

planets (0.1.13-21)

Gravitation simulation of planetary bodies

plastimatch (1.9.4+dfsg.1-2build2)

medical image reconstruction and registration

pnetcdf-bin (1.12.3-2)

Programs for reading and writing parallel NetCDF files

populations (1.2.33+svn0120106+dfsg-6)

population genetic software

praat (6.4.05+dfsg-1)

program for speech analysis and synthesis

prime-phylo (1.0.11-10build1)

bayesian estimation of gene trees taking the species tree into account

proj-bin (9.3.1-1)

Cartographic projection library (tools)

psi4 (1:1.3.2+dfsg-5build1)

Quantum Chemical Program Suite

psi4-data (1:1.3.2+dfsg-5build1)

Quantum Chemical Program Suite (data files)

psortb (3.0.6+dfsg-3build2)

bacterial localization prediction tool

psychtoolbox-3-common (3.0.19.5.dfsg1-1)

toolbox for vision research -- arch/interpreter independent part

psychtoolbox-3-lib (3.0.19.5.dfsg1-1)

toolbox for vision research -- arch-specific parts

pyfai (2024.02-1)

Fast Azimuthal Integration scripts

pymca (5.8.7+dfsg-2build1)

Applications and toolkit for X-ray fluorescence analysis -- scripts

pymca-data (5.8.7+dfsg-2build1)

Architecture independent data files for PyMca

pymol (2.5.0+dfsg-1build4)

Molecular Graphics System

pymol-data (2.5.0+dfsg-1build4)

data files for PyMOL

python-escript-doc (5.6-6build2)

Documentation for Escript/Finley

python3-bornagain (21.1+ds3-2build2)

Simulate and fit X-ray and neutron GISAS -- Python3

python3-dials (3.17.0+dfsg3-3)

Diffraction Integration for Advanced Light Sources - Python3

python3-escript (5.6-6build2)

Escript/Finley finite elements Python3 system (with OpenMP)

python3-escript-mpi (5.6-6build2)

Escript/Finley finite elements Python3 system (OpenMP + MPI)

python3-onnx (1.14.1-2)

Open Neural Network Exchange (ONNX) (Python)

python3-pybigwig (0.3.22+dfsg-1build1)

Python 3 module for quick access to bigBed and bigWig files

python3-pyobjcryst (2.2.5-1build3)

Object-Oriented Crystallographic Library bindings (Python 3)

python3-xeus-python-shell (0.15.10+~0.6.1-2)

Native jupyter kernel for python (python library)

qfitsview (4.1+dfsg-2)

FITS file viewer based on DPUSER

qgis (3.28.15+dfsg-1)

Geographic Information System (GIS)

qgis-api-doc (3.28.15+dfsg-1)

QGIS API documentation

qgis-common (3.28.15+dfsg-1)

QGIS - architecture-independent data

qgis-plugin-grass (3.28.15+dfsg-1)

GRASS plugin for QGIS

qgis-plugin-grass-common (3.28.15+dfsg-1)

GRASS plugin for QGIS - architecture-independent data

qgis-provider-grass (3.28.15+dfsg-1)

GRASS provider for QGIS

qgis-providers (3.28.15+dfsg-1)

collection of data providers to QGIS

qgis-providers-common (3.28.15+dfsg-1)

collection of data providers to QGIS - architecture-independent files

qgis-server (3.28.15+dfsg-1)

QGIS server providing various OGC services

qgis-server-bin (3.28.15+dfsg-1)

QGIS server providing various OGC services (executables)

qgis-server-common (3.28.15+dfsg-1)

QGIS server providing various OGC services (data)

qgis-server-dummy (3.28.15+dfsg-1)

QGIS server providing various OGC services (dummy)

qgis-server-landingpage (3.28.15+dfsg-1)

QGIS server providing various OGC services (landing page)

qgis-server-wcs (3.28.15+dfsg-1)

QGIS server providing various OGC services (WCS)

qgis-server-wfs (3.28.15+dfsg-1)

QGIS server providing various OGC services (WFS)

qgis-server-wfs3 (3.28.15+dfsg-1)

QGIS server providing various OGC services (WFS 3)

qgis-server-wms (3.28.15+dfsg-1)

QGIS server providing various OGC services (WMS)

qgis-server-wmts (3.28.15+dfsg-1)

QGIS server providing various OGC services (WMTS)

qmapshack (1.17.1-1)

GPS mapping (GeoTiff and vector) and GPSr management

qthid-fcd-controller (4.1-6)

Funcube Dongle controller

qtltools (1.3.1+dfsg-4build1)

Tool set for molecular QTL discovery and analysis

quantum-espresso (6.7-2build2)

Electronic-Structure and Ab-Initio Molecular Dynamics Suite

quantum-espresso-data (6.7-2build2)

Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)

qutemol (0.4.1~cvs20081111-15)

interactive visualization of macromolecules

rasmol (2.7.6.0-3)

visualization of biological macromolecules

rasmol-doc (2.7.6.0-3)

documentation for rasmol

rawtran (1.1-1build3)

RAW photo to FITS converter

ray (2.3.1-8)

de novo genome assemblies of next-gen sequencing data

ray-extra (2.3.1-8)

Scripts and XSL sheets for post-processing for ray

rdkit-data (202309.3-2)

Collection of cheminformatics and machine-learning software (data files)

readseq (1-14)

Conversion between sequence formats

reapr (1.0.18+dfsg-5build2)

universal tool for genome assembly evaluation

relion (3.1.3-3build1)

toolkit for 3D reconstructions in cryo-electron microscopy

relion-gui (3.1.3-3build1)

toolkit for 3D reconstructions in cryo-electron microscopy (gui apps)

rocs (4:23.08.5-0ubuntu1)

graph theory IDE

ruby-getspg (2.3.1-1)

C library for crystal symmetry determination - Ruby bindings

runcircos-gui (0.0+git20200528.82dda8c-1)

GUI tool to run circos

saga (9.3.1+dfsg-3)

System for Automated Geoscientific Analyses

saga-common (9.3.1+dfsg-3)

SAGA GIS architecture independent files

samtools (1.19.2-1)

processing sequence alignments in SAM, BAM and CRAM formats

samtools-test (1.19.2-1)

test files for the samtools package

saods9 (8.5+repack-1)

Image display tool for astronomy

scamp (2.10.0-2)

Compute astrometric and photometric solutions

scram (0.16.2-3build1)

Probabilistic Risk Analysis Tool

scram-gui (0.16.2-3build1)

SCRAM GUI front-end

scrappie (1.4.2-8)

basecaller for Nanopore sequencer

secrecy (0.0.5+ds-3)

tool to handle libsecrecy keys and encrypted files

seer (1.1.4-7build2)

genomic sequence element (kmer) enrichment analysis

segemehl (0.3.4-5)

short read mapping with gaps

seqkit (2.3.1+ds-2ubuntu0.3)

cross-platform and ultrafast toolkit for FASTA/Q file manipulation

seqkit-examples (2.3.1+ds-2ubuntu0.3)

examples for seqkit: toolkit for FASTA/Q file manipulation

shapeit4 (4.2.2+dfsg-1build1)

fast and accurate method for estimation of haplotypes (phasing)

shasta (0.11.1-4build1)

nanopore whole genome assembly (binaries and scripts)

shelxle (1.0.1552-1)

graphical user interface for SHELXL

sightcalibrator (23.1.0-2)

Camera calibration software

sightviewer (23.1.0-2)

DICOM viewer

sigma-align (1.1.3-8)

Simple greedy multiple alignment of non-coding DNA sequences

sigviewer (0.6.4-3)

GUI viewer for biosignals such as EEG, EMG, and ECG

silx (1.1.2+dfsg-2build1)

Toolbox for X-Ray data analysis - Executables

simka (1.5.3-8)

comparative metagenomics method dedicated to NGS datasets

simkamin (1.5.3-8)

approximate comparative metagenomics method dedicated to NGS datasets

siril (1.2.1-1)

astronomical image processing tool

siril-common (1.2.1-1)

architecture-independent files for siril

skycat (3.1.2+starlink1~b+dfsg-7build1)

Image visualization and access to catalogs and data for astronomy

source-extractor (2.28.0+ds-1)

Source extractor for astronomical images

sp800-90b-entropy-assessment (1.1.5-4)

Estimating the quality of a source of entropy

spatialite-bin (5.1.0a-1)

Geospatial extension for SQLite - tools

sra-toolkit (3.0.3+dfsg-6ubuntu1)

utilities for the NCBI Sequence Read Archive

stacks (2.66+dfsg-1)

pipeline for building loci from short-read DNA sequences

staden (2.0.0+b11-4build2)

DNA sequence assembly (Gap4/Gap5), editing and analysis tools

staden-common (2.0.0+b11-4build2)

Architecture independent files for Staden

staden-io-lib-examples (1.15.0-1)

programs for manipulating DNA sequencing files (usage examples)

staden-io-lib-utils (1.15.0-1)

programs for manipulating DNA sequencing files

starpu-examples (1.4.3+dfsg-2)

Task scheduler for heterogeneous multicore machines - exs

stellarium (23.4-2)

real-time photo-realistic sky generator

stellarium-data (23.4-2)

Stellarium data files

stimfit (0.16.0-1.2build1)

Program for viewing and analyzing electrophysiological data

stringtie (2.2.1+ds-3)

assemble short RNAseq reads to transcripts

sumo (1.18.0+dfsg-3build3)

Simulation of Urban MObility (SUMO)

survex (1.4.4-1build1)

cave surveying and mapping software

survex-aven (1.4.4-1build1)

sophisticated cave survey viewer for Survex

swarp (2.41.5-1build1)

Resample and co-add together FITS images

syrthes (4.3.5+20200129-dfsg1-1build2)

Transient thermal simulations in complex solid geometries

syrthes-gui (4.3.5+20200129-dfsg1-1build2)

Transient thermal simulations in complex solid geometries - GUI

syrthes-tests (4.3.5+20200129-dfsg1-1build2)

Test cases for SYRTHES

syrthes-tools (4.3.5+20200129-dfsg1-1build2)

Transient thermal simulations in complex solid geometries - tools

tabix (1.19+ds-1)

generic indexer for TAB-delimited genome position files

tcl-fitstcl (2.5-2)

Tcl interface to FITS files

tclfitsy (8.5+repack-1)

Tcl FITS Extension

theli (3.1.4-1build4)

Astronomical image data reduction pipeline

therion (6.2.0-1build1)

Cave surveying - 2D and 3D drawing software

therion-doc (6.2.0-1build1)

Documentation for Therion Cave surveying software

therion-viewer (6.2.0-1build1)

Cave surveying - 3D viewer for therion models

timbl (6.5-3)

Tilburg Memory Based Learner

timblserver (1.14-3)

Server extensions for Timbl

tippecanoe (2.45.0-1)

build vector tilesets from large collections of GeoJSON features

tksao (8.5+repack-1)

Tk widgets for astronomical imaging and data visualization

topp (2.6.0+cleaned1-4)

set of programs implementing The OpenMS Proteomic Pipeline

toppic (1.5.3+dfsg1-1build1)

Top-down proteoform identification and characterization (programs)

toppic-common (1.5.3+dfsg1-1build1)

Top-down proteoform identification and characterization (common data)

transfuse (0.5.8-1build2)

Runs formatted documents through transformations/translation

tree-ppuzzle (5.3~rc16+dfsg-9)

Parallelized reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle (5.3~rc16+dfsg-9)

Reconstruction of phylogenetic trees by maximum likelihood

tree-puzzle-doc (5.3~rc16+dfsg-9)

Reconstruction of phylogenetic trees by maximum likelihood (doc)

treeviewx (0.5.1+git20100823.7e4d0e9-4build1)

Displays and prints phylogenetic trees

twms (0.07z+git20201202+bb7c3f8-2ubuntu0.1)

tiny web map service

ucto (0.21.1-2build5)

Unicode Tokenizer

ucx-utils (1.15.0-1)

Utilities for the UCX messaging library

uhd-doc (4.6.0.0+ds1-5.1ubuntu0.24.04.1)

universal hardware driver for Ettus Research products - doc

uhd-host (4.6.0.0+ds1-5.1ubuntu0.24.04.1)

universal hardware driver for Ettus Research products - host apps

uncalled (2.3+ds-1build1)

Utility for Nanopore Current Alignment to Large Expanses of DNA

unifrac-tools (1.4-3)

high-performance phylogenetic diversity calculations (binaries)

unihedron-device-manager (1.0.0.337-1)

Unihedron Device manager (UDM)

unikmer (0.19.1-1ubuntu0.24.04.3)

Toolkit for nucleic acid k-mer analysis

v-sim (3.7.2-9)

Visualize atomic structures

v-sim-common (3.7.2-9)

Visualize atomic structures (support files)

v-sim-plugins (3.7.2-9)

Plugins for V_Sim (a 3D visualization package)

vcfanno (0.3.5+ds-2ubuntu0.24.04.3)

annotate a VCF with other VCFs/BEDs/tabixed files

vcfanno-examples (0.3.5+ds-2ubuntu0.24.04.3)

examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

veusz (3.6.2-1build1)

2D and 3D scientific plotting application with graphical interface

vt (0.57721+ds-3)

toolset for short variant discovery in genetic sequence data

vt-examples (0.57721+ds-3)

toolset for short variant discovery in genetic sequence data (examples)

wcslib-tools (8.2.2+ds-3)

Command line tools utilizing wcslib

wcstools (3.9.7-1)

Handle the WCS of a FITS image

wise (2.4.1-23)

comparison of biopolymers, like DNA and protein sequences

wsclean (3.4-1build1)

Fast generic widefield interferometric imager

wxastrocapture (1.8.1+git20140821.796e1a1+dfsg-2build1)

Windows linuX Astronomy Capture

xcas (1.9.0.69+dfsg2-1)

Computer Algebra System - console and graphical calculator

xeus-python-dev (0.15.10+~0.6.1-2)

Native jupyter kernel for python (headers)

xgboost (2.0.3-1)

Scalable and Flexible Gradient Boosting (Executable)

xgterm (2.1+dfsg-1)

Terminal emulator to work with IRAF

ximtool (2.1+dfsg-1)

Interactive image display program for the X Window System

xmakemol (5.16-10build1)

program for visualizing atomic and molecular systems

xmakemol-gl (5.16-10build1)

program for visualizing atomic and molecular systems (OpenGL)

xmpsolve (3.2.1-10)

Multiprecision polynomial solver (graphical version)

xpython (0.15.10+~0.6.1-2)

Native jupyter kernel for python (binary)

xyscan (4.64-2)

data thief for scientists

yorick-gy (0.0.5-2)

GObject introspection and Gtk bindings for Yorick

yorick-gyoto (2.0.2-1)

General relativistic geodesic integration for the Yorick language

yorick-mpy-common (2.2.04+dfsg1-12)

Message Passing Yorick (common files)

yorick-mpy-mpich2 (2.2.04+dfsg1-12)

Message Passing Yorick (MPICH2 build)

yorick-mpy-openmpi (2.2.04+dfsg1-12)

Message Passing Yorick (OpenMPI build)

z88 (13.0.0+dfsg2-6)

Finite Element Analysis Program - runtime

zegrapher (3.1.1-4)

plotting mathematical functions and sequences on the plane

zfp (1.0.1-3)

Fixed-Rate Compressed Floating-Point Arrays - binary programs